Example: consider a T=4 virus (= 4 x 60 subunits = 240 subunits)
The
minimum free energy solution is to divide each triangle into 4 further triangles
and place a subunit at each corner. There will be 12 x 20 subunits, i.e. 240
with 12 pentamers and 30 hexamers. They are obviously not equivalent, but 180
are and the remaining 60 are making similar contacts. They are said to be quasi
equivalent. Protein subunits are not spaced independently but cluster because
this maximizes the intermolecular interactions which stabilize the particle.
One consequence of this clustering is that bonds between subunits in a capsomer
are stronger than bonds between capsomers.